爱华网同行真是有有心人，已经整理了很多关于启动子分析的网站，我在这里转载一下。
s/blog_550f64320100du0g.html
1. NCBI上的Finding Promoter（NCBI推荐的）
（http://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/DNA/dna21b.html）
Promoter Scan from the Bioinformatics and Molecular Analysissection of NIH.
TFSearch from the Computational Biology Research Center ofJapan.
DRAGON Gene Start Finder from the DRAGON Genome Explorersite.
2. Promoter 2.0 Prediction Server（http://www.cbs.dtu.dk/services/Promoter/）
Promoter2.0 predicts transcription start sites of vertebrate PolIIpromoters in DNA sequences. It has been developed as an evolutionof simulated transcription factors that interact with sequences inpromoter regions. It builds on principles that are common to neuralnetworks and genetic algorithms.
3. TFSEARCH（http://www.cbrc.jp/research/db/TFSEARCH.html）
Searching Transcription Factor Binding Sites (ver 1.3)
4. Neural Network PromoterPrediction (伯克利大学)
（http://fruitfly.org:9005/seq_tools/promoter.html）
5. The Markov Chain PromoterPrediction Server(杜克大学)
（http://tools.genome.duke.edu/gen ...ter/McPromoter.html）
6. Neural Network PromoterPrediction (BIosino：中国生物信息 )
（http://promotor.biosino.org/）
7. Core-Promoter PredictionProgram （by Michael Zhang）
（http://rulai.cshl.org/tools/genefinder/CPROMOTER/human.htm）
